Stem-loop bdi-MIR444a

Accession

MI0011558

Description

Brachypodium distachyon bdi-MIR444a precursor miRNA

Gene family

MIPF0000402; MIR444

Literature search

1 open access papers mention bdi-MIR444a
(3 sentences)

Sequence

cacgcguccgacuagaggcagcaacuccauaacuugcggaaagcuuguuggaugaugaccaugccaaugauuuuaccgaaguuaugcagUUGCUGCCUCAAGCUUGCUGC
...(((..(((((.((((((((((((.((((((((.(((((((.((((((((((.....))).))))))))))).))))))))))).)))))))))))).)).))).)))

Structure

cac   uc   -  a            c        g   -    c       -   a 
   gcg  cga cu gaggcagcaacu cauaacuu cgg aaag uuguugg aug u
   |||  ||| || |||||||||||| |||||||| ||| |||| ||||||| ||| g
   CGU  GUU GA CUCCGUCGUUga guauugaa gcc uuuu aguaacc uac a
---   -C   C  A            c        -   a    -       g   c 

Annotation confidence Not enough data

Genome context

Unknown

Mature bdi-miR444a

• Accession: MIMAT0012173
• Description: Brachypodium distachyon bdi-miR444a mature miRNA
• Sequence: 90 - UUGCUGCCUCAAGCUUGCUGC - 110
• Evidence: experimental ; qRT-PCR [1], Illumina [2]

References

1. PubMed ID: 19585143
   Conserved microRNAs and their targets in model grass species Brachypodium distachyon
   "Unver T, Budak H"
   "Planta (2009) 230:659-669


2. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145