Stem-loop bdi-MIR171a

Accession

MI0011559

Description

Brachypodium distachyon bdi-MIR171a precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

1 open access papers mention bdi-MIR171a
(3 sentences)

Sequence

gagguaggaggcggagcggaggaaaggcuucccgaccgggggaagcuggUGAUUGAGCCGCGCCAAUAUCucucgcgcgccaguggaauugccggcuucagcugcuuucgccgccgcagc
..........((((.(((((((...((((.(((.....)))(((((((((((((..(((((((...........)))))...))..))))))))))))))))).)))))))..))))...

Structure

gagguaggag    -a       aaa    ucccgaccgggg             GA  ---     CAAU 
          gcgg  gcggagg   ggcu            gaagcuggUGAUU  GC   CGCGC    A
          ||||  |||||||   ||||            |||||||||||||  ||   |||||    U
          cgcc  cgcuuuc   ucga            cuucggccguuaa  ug   gcgcg    C
-------cga    gc       --g    ------------             gg  acc     cucu 

Annotation confidence Not enough data

Genome context

3: 52059037-52059156 [-]

Mature bdi-miR171a

• Accession: MIMAT0012174
• Description: Brachypodium distachyon bdi-miR171a mature miRNA
• Sequence: 50 - UGAUUGAGCCGCGCCAAUAUC - 70
• Evidence: experimental ; qRT-PCR [1]

References

1. PubMed ID: 19585143
   Conserved microRNAs and their targets in model grass species Brachypodium distachyon
   "Unver T, Budak H"
   "Planta (2009) 230:659-669