Stem-loop bdi-MIR156a

Accession

MI0011566

Description

Brachypodium distachyon bdi-MIR156a precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

5 open access papers mention bdi-MIR156a
(28 sentences)

Sequence

cggauggcgccaccgggcugaccuggaaggcgcuggccgucgacauugccgggggccgguuguggcuggcgcugugggcacuaugaucccauggcugaguUGACAGAAGAGAGAGAGCACAgcuggagucggcggccgugacuccug
.(((.((((((.(((((....)))))..))))))((((((((((..((((.((.((((((....)))))).))...))))......(((...(((((.((................)).)))))))))))))))))).....)))..

Structure

-c   uggcgccaccgggcugaccuggaaggcgcu          auugccgggggccgguuguggcuggcgcugugggcacuauga   cau     a  UGACAGA 
  gga                              ggccgucgac                                          ucc   ggcug gu       A
  |||                              ||||||||||                                          |||   ||||| ||        
  ccu                              ccggcggcug                                          agg   ucgAC CG       G
gu   -------------------------cagug          ------------------------------------------   ---     A  AGAGAGA 

Annotation confidence Not enough data

Genome context

4: 39473438-39473584 [+]

Mature bdi-miR156a

• Accession: MIMAT0012181
• Description: Brachypodium distachyon bdi-miR156a mature miRNA
• Sequence: 101 - UGACAGAAGAGAGAGAGCACA - 121
• Evidence: experimental ; qRT-PCR [1]

References

1. PubMed ID: 19585143
   Conserved microRNAs and their targets in model grass species Brachypodium distachyon
   "Unver T, Budak H"
   "Planta (2009) 230:659-669