miRBase entry: bdi-MIR399a

Stem-loop bdi-MIR399a


Accession
MI0011572
Description
Brachypodium distachyon bdi-MIR399a precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
3 open access papers mention bdi-MIR399a
(10 sentences)

Sequence

cagugcaguucuccucuggcauggaugcuaauguagcaggcccugcacaauggacuaugcuaucacugucccUGCCAAAGGAGAAUUACCCUGccagugc
(((.(.(((((((((.(((((.((((......((((((((.((........)).)).))))))....)))).))))).))))))))).).))).......

Structure
-------   u c         c     u    gcuaau      -  c  ugc 
       cag g aguucuccu uggca ggau      guagca gg cc   a
       ||| | ||||||||| ||||| ||||      |||||| || ||    
       GUC C UUAAGAGGA ACCGU ccug      uaucgu uc gg   c
cgugacc   C A         A     c    --ucac      a  a  uaa 


Annotation confidence Not enough data
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Genome context
1: 34375795-34375894 [-]

Database links

Mature bdi-miR399a

Accession MIMAT0012187
Description Brachypodium distachyon bdi-miR399a mature miRNA
Sequence 73 - UGCCAAAGGAGAAUUACCCUG - 93
Evidence not_experimental

References

  1. PubMed ID: 19585143
    Conserved microRNAs and their targets in model grass species Brachypodium distachyon
    "Unver T, Budak H"
    "Planta (2009) 230:659-669