Stem-loop bdi-MIR1135

Accession

MI0011576

Description

Brachypodium distachyon bdi-MIR1135 precursor miRNA

Gene family

MIPF0000382; MIR1122

Literature search

2 open access papers mention bdi-MIR1135
(3 sentences)

Sequence

aggagcauaauuaguacuuccuccgaccgguauuacuugucucaaauuugcccaaauacggauguaucuauguguaaaacgugucuagauacauguaauaUUUCGACAAGUAAUUCCGACCGGAgggagugccauaau
.............((((((((((((..(((.((((((((((......((((((......))((((((((((((.....))))....))))))))))))......)))))))))).)))..))))))))))))......

Structure

aggagcauaauua            ac   u          ucaaau    ccaaauacgg        ----    g 
             guacuuccuccg  cgg auuacuuguc      uugc          auguaucu    augu u
             ||||||||||||  ||| ||||||||||      ||||          ||||||||    |||| a
             cgugagggAGGC  GCC UAAUGAACAG      aaug          uacauaga    ugca a
-------uaauac            CA   U          CUUUau    ----------        ucug    a 

Annotation confidence Not enough data

Genome context

2: 24701180-24701317 [+]

Mature bdi-miR1135

• Accession: MIMAT0012191
• Description: Brachypodium distachyon bdi-miR1135 mature miRNA
• Sequence: 101 - UUUCGACAAGUAAUUCCGACCGGA - 124
• Evidence: not_experimental

References

1. PubMed ID: 19585143
   Conserved microRNAs and their targets in model grass species Brachypodium distachyon
   "Unver T, Budak H"
   "Planta (2009) 230:659-669