miRBase entry: dme-mir-307b

Stem-loop dme-mir-307b


Accession
MI0011577
Description
Drosophila melanogaster dme-mir-307b precursor miRNA
Gene family
MIPF0000937; mir-307as

Literature search
2 open access papers mention dme-mir-307b
(9 sentences)

Sequence

21452 reads, 46 reads per million, 49 experiments
uaguuucguggauacucuguccugcuaucgcUCACUCAAGGAGGUUGUGAUGGauaccauaucgaaauaacaUCACACCCAGGUUGAGUGAGUcaaagcaagacaaaaugcugcuaacuu
.((((..((((......((((.((((...((((((((((...((.(((((((..................))))))).))...))))))))))...)))).)))).....)))).)))).

Structure
u    uc    auacuc    c    auc          GGA  U       Gauaccau 
 aguu  gugg      uguc ugcu   gcUCACUCAA   GG UGUGAUG        a
 ||||  ||||      |||| ||||   ||||||||||   || |||||||         
 ucaa  cguc      acag acga   UGAGUGAGUU   CC ACACUac        u
u    -u    -guaaa    a    aac          GGA  C       aauaaagc 


Annotation confidence Not enough data
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Genome context
chr2R: 9621234-9621353 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dme-mir-307b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dme-miR-307b-5p

Accession MIMAT0012194
Description Drosophila melanogaster dme-miR-307b-5p mature miRNA
Sequence 32 - UCACUCAAGGAGGUUGUGAUGG - 53
Evidence experimental
Illumina [1]
Database links

Mature dme-miR-307b-3p

Accession MIMAT0012195
Description Drosophila melanogaster dme-miR-307b-3p mature miRNA
Sequence 73 - UCACACCCAGGUUGAGUGAGU - 93
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9