Stem-loop sequence dme-mir-2491

Accession

MI0011580 (change log)

Description

Drosophila melanogaster miR-2491 stem-loop

Literature search

1 open access papers mention dme-mir-2491
(5 sentences)

Stem-loop

   -----cgc   c   uuu    c        cu    a         uuccauguugcuacugcggccaauugu 
5'         gaa cac   gugc gcuguugc  uugc guugcuguu                           u
           ||| |||   |||| ||||||||  |||| |||||||||                            
3'         cuu gug   cacg cgaugacg  aacg cgacgacaa                           g
   agcuuuca   a   -cu    a        uc    a         caacuacaacaacuacaacgacuacgc 

Deep sequencing

224 reads, 0 reads per million, 34 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Release_6; GCA_000001215.4): chrX: 22833440-22833583 [-]
• Overlapping transcripts:

  sense

  FBtr0333179 ; fog-RC; intron 1

  FBtr0333180 ; fog-RD; intron 1

  FBtr0333182 ; fog-RF; intron 2

  FBtr0077342 ; fog-RA; intron 2

  FBtr0100538 ; fog-RB; intron 3

  FBtr0333181 ; fog-RE; intron 3

  antisense

  FBtr0333178 ; CG42346-RD; intron 1

  FBtr0333177 ; CG42346-RC; intron 1

Database links

• RNAcentral:URS0000383AB6_7227
• miRBase Tracker:MI0011580

Mature sequence dme-miR-2491-5p

• Accession: MIMAT0012198
• Previous IDs: dme-miR-2491
• Sequence: 18 - cgcuguugccuuugcaguugcu - 39
• Deep sequencing: 15 reads, 9 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000158DDE_7227
• Predicted targets:
  • microrna.org:dme-miR-2491-5p

Mature sequence dme-miR-2491-3p

• Accession: MIMAT0020912
• Sequence: 95 - caacaacagcagcagcaa - 112
• Deep sequencing: 166 reads, 32 experiments
• Evidence: not experimental

References

1. PMID:20037610 "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila" Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC Nat Genet. 42:6-9(2010).