miRBase entry: dme-mir-2498

Stem-loop dme-mir-2498


Accession
MI0011587
Description
Drosophila melanogaster dme-mir-2498 precursor miRNA

Literature search
1 open access papers mention dme-mir-2498
(1 sentences)

Sequence

107 reads, 156 reads per million, 16 experiments
cacauuugccauaaucuccuuaaaauagUAAAGGCUGUUAUGCUUAUUUUUGuguuuuuuacaAAACUGGCAUUCCCGUCUUACUUauuuucagaaaacuuacaccaaagug
(((.((((..........((.((((((((((.(((.(..(((((...(((((((.....)))))))..)))))..).))))))).)))))).))...........)))))))

Structure
   a    -ccauaaucuc  u      -    A   U UU     UAU       u 
cac uuug           cu aaaaua gUAA GGC G  AUGCU   UUUUGug u
||| ||||           || |||||| |||| ||| |  |||||   ||||||| u
gug aaac           ga uuuuaU CAUU CUG C  UACGG   AAAacau u
   -    cacauucaaaa  c      U    -   C CU     -UC       u 


Annotation confidence High
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Genome context
chr2R: 20584709-20584820 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from dme-mir-2498
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dme-miR-2498-5p

Accession MIMAT0012210
Description Drosophila melanogaster dme-miR-2498-5p mature miRNA
Sequence 29 - UAAAGGCUGUUAUGCUUAUUUUUG - 52
Evidence experimental
Illumina [1]
Database links

Mature dme-miR-2498-3p

Accession MIMAT0012211
Description Drosophila melanogaster dme-miR-2498-3p mature miRNA
Sequence 64 - AAACUGGCAUUCCCGUCUUACUU - 86
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9