Stem-loop sequence dme-mir-2499

Accession MI0011588
Description Drosophila melanogaster miR-2499 stem-loop
Stem-loop 
uccuugc    g      u    ug   ag c    -g    --a    uu 
       ugug gugugg ugcg  cgu  a guca  cgca   ugcc  u
       |||| |||||| ||||  |||  | ||||  ||||   ||||  g
       acac cacgcc augc  gca  u cagu  gcgu   gcgg  u
------u    a      u    cu   cu a    ag    acg    uu
Get sequence
Deep sequencing
149 reads, 17 experiments
Genome context
Coordinates (BDGP5.0) Overlapping transcripts
X: 19451041-19451136 [+]
intergenic
Clustered miRNAs
< 10kb from dme-mir-2499
dme-mir-972 X: 19445185-19445275 [+]
dme-mir-973 X: 19445561-19445661 [+]
dme-mir-974 X: 19445711-19445811 [+]
dme-mir-2499 X: 19451041-19451136 [+]
dme-mir-4966 X: 19452403-19452529 [+]
dme-mir-975 X: 19452786-19452876 [+]
dme-mir-976 X: 19452928-19453024 [+]
dme-mir-977 X: 19453055-19453153 [+]
dme-mir-978 X: 19455269-19455360 [+]
dme-mir-979 X: 19455870-19455964 [+]

Mature sequence dme-miR-2499-5p

Accession MIMAT0012212
Previous IDs dme-miR-2499*
Sequence

22 -  

cgugcguagacgucagcgcaaugc

 - 45

Get sequence
Deep sequencing 19 reads, 7 experiments
Evidence experimental; Solexa [1]
Predicted targets

Mature sequence dme-miR-2499-3p

Accession MIMAT0012213
Previous IDs dme-miR-2499
Sequence

60 -  

augcggaugacauucacguccgua

 - 83

Get sequence
Deep sequencing 124 reads, 17 experiments
Evidence experimental; Solexa [1]
Predicted targets

References

1
PMID:20037610 "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila" Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC Nat Genet. 42:6-9(2010).