miRBase entry: dme-mir-2501

Stem-loop dme-mir-2501


Accession
MI0011590
Description
Drosophila melanogaster dme-mir-2501 precursor miRNA

Literature search
1 open access papers mention dme-mir-2501
(1 sentences)

Sequence

61 reads, 30 reads per million, 23 experiments
GUAAGUUUGGAGUGCCUGGGCUAagaacuuccauucugaaacuuaACUCUUGCAAUCAAACUUUCUUucag
..((((((((..(((..(((.((((...(((......))).)))).)))..))).))))))))........

Structure
------GU        AG   CU   C    aac   ca 
        AAGUUUGG  UGC  GGG UAag   uuc  u
        ||||||||  |||  ||| ||||   |||   
        UUCAAACU  ACG  CUC auuc   aag  u
gacuUUCU        -A   UU   A    --a   uc 


Annotation confidence Not enough data
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Genome context
chr3L: 8111107-8111177 [+]

Database links

Mature dme-miR-2501-5p

Accession MIMAT0012216
Description Drosophila melanogaster dme-miR-2501-5p mature miRNA
Sequence 1 - GUAAGUUUGGAGUGCCUGGGCUA - 23
Evidence experimental
Illumina [1]
Database links

Mature dme-miR-2501-3p

Accession MIMAT0012217
Description Drosophila melanogaster dme-miR-2501-3p mature miRNA
Sequence 46 - ACUCUUGCAAUCAAACUUUCUU - 67
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9

  2. PubMed ID: 20620959
    MicroRNA biogenesis via splicing and exosome-mediated trimming in Drosophila
    "Flynt AS, Greimann JC, Chung WJ, Lima CD, Lai EC"
    "Mol Cell (2010) 38:900-907