Stem-loop dps-mir-92c

Accession

MI0011604

Description

Drosophila pseudoobscura dps-mir-92c precursor miRNA

Sequence

gcggaagggugcaucgagcugcuuugauuuguAGGCCGUGGUUCUUGCAAAUACGgauucauaacgUAUUGCACUAGCCCCGGUCCAAaaaacaauagcaacgccggcaacagca
(((......)))..((.(((((((((.(((...(((((.((((..(((((.((((.........)))))))))..)))).)))))...))).))).))))..))))((....)).

Structure

gcggaagggugcau  a  --    -   a   guA     U    CU     A    gau 
              cg gc  ugcu uug uuu   GGCCG GGUU  UGCAA UACG   u
              || ||  |||| ||| |||   ||||| ||||  ||||| ||||   c
              gc cg  acga aac aaa   CUGGC CCGA  ACGUU AUgc   a
-----acgacaacg  -  ca    u   a   AAC     C    UC     -    aau 

Annotation confidence Not enough data

Genome context

3: 8679866-8679980 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from dps-mir-92c

Mature dps-miR-92c-5p

• Accession: MIMAT0012243
• Description: Drosophila pseudoobscura dps-miR-92c-5p mature miRNA
• Sequence: 33 - AGGCCGUGGUUCUUGCAAAUACG - 55
• Evidence: experimental ; Illumina [1]

Mature dps-miR-92c-3p

• Accession: MIMAT0012244
• Description: Drosophila pseudoobscura dps-miR-92c-3p mature miRNA
• Sequence: 67 - UAUUGCACUAGCCCCGGUCCAA - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9