Stem-loop sequence dps-mir-1002

Accession MI0011606
Description Drosophila pseudoobscura miR-1002 stem-loop
Gene family MIPF0000909; mir-1002
Stem-loop 
-  c    ccu  ca             cc       u g      gg    uaau  aa 
 gg aggu   cu  aaauaaucgggca  uaaguag u auacaa  gcga    gu  a
 || ||||   ||  |||||||||||||  ||||||| | ||||||  ||||    ||   
 uc ucca   ga  uuuguuagcucgu  auucauc a uguguu  cgcu    ca  a
a  -    -ac  ac             aa       c g      -a    --uu  ag
Get sequence
Genome context
Coordinates (dpse_r2.26_FB2012_01) Overlapping transcripts
4_group1: 1722916-1723031 [+]
intergenic
Clustered miRNAs
< 10kb from dps-mir-1002
dps-mir-968 4_group1: 1722779-1722895 [+]
dps-mir-1002 4_group1: 1722916-1723031 [+]

Mature sequence dps-miR-1002-5p

Accession MIMAT0012247
Previous IDs dps-miR-1002
Sequence

29 -  

cuaaguaguugauacaagggcga

 - 51

Get sequence
Evidence experimental; Solexa [1]

Mature sequence dps-miR-1002-3p

Accession MIMAT0012248
Previous IDs dps-miR-1002*
Sequence

70 -  

gcauugugugaccuacuuaaau

 - 91

Get sequence
Evidence experimental; Solexa [1]

References

1
PMID:20037610 "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila" Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC Nat Genet. 42:6-9(2010).