Stem-loop dps-mir-959

Accession

MI0011611

Description

Drosophila pseudoobscura dps-mir-959 precursor miRNA

Gene family

MIPF0000910; mir-959

Sequence

uuuuguuuugguucuauguucUUAGUACUUGGGUUGAUAAAGAccacucguagugugagaagccuUUGUCAUCGCGGGUAUUAUGCAacauagcucaaaagcgcaacaaaau
(((((((.((.((((((((((.(((((((((.(.((((((((.(..((((.....))))..).)))))))).).))))))))).).))))))).....)).)).))))))).

Structure

-       u  g  -----       - U         G U        A ca    u 
 uuuuguu ug uu     cuauguu c UAGUACUUG G UGAUAAAG c  cucg a
 ||||||| || ||     ||||||| | ||||||||| | |||||||| |  |||| g
 aaaacaa gc aa     gauacaA G AUUAUGGGC C ACUGUUuc g  gagu u
u       c  g  aacuc       C U         G U        c aa    g 

Annotation confidence Not enough data

Genome context

4_group4: 3182613-3182724 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from dps-mir-959

Mature dps-miR-959-5p

• Accession: MIMAT0012257
• Description: Drosophila pseudoobscura dps-miR-959-5p mature miRNA
• Sequence: 22 - UUAGUACUUGGGUUGAUAAAGA - 43
• Evidence: experimental ; Illumina [1]

Mature dps-miR-959-3p

• Accession: MIMAT0012258
• Description: Drosophila pseudoobscura dps-miR-959-3p mature miRNA
• Sequence: 66 - UUGUCAUCGCGGGUAUUAUGCA - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9