miRBase entry: dps-mir-210b

Stem-loop dps-mir-210b


Accession
MI0011625
Description
Drosophila pseudoobscura dps-mir-210b precursor miRNA
Gene family
MIPF0000086; mir-210


Sequence

ugaugcuaauauggccucuuacaauagccgcugucacacgcacaagagucuuaaaucuaaucUUGUGCAGUGGCCAGCAGCUGCaauaaguaccgaucgagcuaaauca
(((((((....(((...((((...((((.((((((((..((((((((.............)))))))).)))).)))).))))...))))..)))....)))...))))

Structure
    ---   aaua   ccu    caa    c    -    ac        gucuu 
ugau   gcu    ugg   cuua   uagc gcug ucac  gcacaaga     a
||||   |||    |||   ||||   |||| |||| ||||  ||||||||     a
acua   cga    gcc   gaau   GUCG CGAC GGUG  CGUGUUcu     a
    aau   gcua   -au    aaC    A    C    -A        aaucu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
XL_group3a: 1970510-1970618 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dps-mir-210b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-210b

Accession MIMAT0012283
Description Drosophila pseudoobscura dps-miR-210b mature miRNA
Sequence 63 - UUGUGCAGUGGCCAGCAGCUGC - 84
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9