miRBase entry: dps-mir-2507a

Stem-loop dps-mir-2507a

Accession

MI0011632

Description

Drosophila pseudoobscura dps-mir-2507a precursor miRNA

Gene family

MIPF0000566; mir-310

Sequence

auuuauaacgacaacaaauuagugggcaugaauuugugccaauauuuuauuuuuuaauuaaUGUUGUACAUUUUCGUGCCUAUAAauuucaaugucucgucuauagau
(((((((((((..(((((((.(((((((((((..(((((.((((((..(((....))).)))))))))))..))))))))))).))))....))).)))).)))))))

Structure

       -    ca   ----    a           uu     c      uu   u 
auuuaua acga  aca    aauu gugggcaugaa  ugugc aauauu  auu u
||||||| ||||  |||    |||| |||||||||||  ||||| ||||||  |||  
uagauau ugcu  ugu    uuaA UAUCCGUGCUU  ACAUG UUGUaa  uaa u
       c    -c   aacu    A           UU     -      -u   u

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

3: 8680507-8680614 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from dps-mir-2507a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dps-miR-2507a

Accession	MIMAT0012291
Description	Drosophila pseudoobscura dps-miR-2507a mature miRNA
Sequence	62 - UGUUGUACAUUUUCGUGCCUAUAA - 85
Evidence	experimental Illumina [1]

References

PubMed ID: 20037610
Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
"Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
"Nat Genet (2010) 42:6-9