miRBase entry: dps-mir-2511-1

Stem-loop dps-mir-2511-1


Accession
MI0011637
Description
Drosophila pseudoobscura dps-mir-2511-1 precursor miRNA
Gene family
MIPF0000977; mir-2511


Sequence

gaaaguguuucccccaccaaaugcacauucgugcuauauggcacacaguugauuuauauuauuuucuaguucaUAAGUCUGUUGAGUGCCAUAGAgcaagaagugugaugcauccuc
....((((.((...........((((.(((.((((.((((((((.(((..(((((((((((.....))))..)))))))..))).)))))))).)))).))))))))).))))....

Structure
gaaa    u  ccccaccaaau    a   g    a        a   uu       --    u 
    gugu uc           gcac uuc ugcu uauggcac cag  gauuuau  auua u
    |||| ||           |||| ||| |||| |||||||| |||  |||||||  |||| u
    uacg ag           ugug aag acgA AUACCGUG GUU  CUGAAUa  ugau u
cucc    u  -----------    -   a    G        A   GU       cu    c 


Annotation confidence Not enough data
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Genome context
4_group4: 3552536-3552652 [+]
Clustered miRNAs
8 other miRNAs are < 10 kb from dps-mir-2511-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-2511

Accession MIMAT0012296
Description Drosophila pseudoobscura dps-miR-2511 mature miRNA
Sequence 74 - UAAGUCUGUUGAGUGCCAUAGA - 95
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9