miRBase entry: dps-mir-2513b

Stem-loop dps-mir-2513b

Accession

MI0011646

Description

Drosophila pseudoobscura dps-mir-2513b precursor miRNA

Gene family

MIPF0000980; mir-2513

Sequence

guaaaggaccaacguacuaccauguaaaccaucuucaaaccauaauauuucaauuuuucauauuauuccuuauuacUAUGGUCUGAAGUUGCUUUACAugguagcacguugguccucuac
(((.(((((((((((.((((((((((((.((.(((((.((((((.((..........................)).)))))).))))).)).)))))))))))).))))))))))).)))

Structure

   a           a            c  u     a      a  uuucaauuuuuc 
gua aggaccaacgu cuaccauguaaa ca cuuca accaua ua            a
||| ||||||||||| |||||||||||| || ||||| |||||| ||             
cau uccugguugca gaugguACAUUU GU GAAGU UGGUAU au            u
   c           c            C  U     C      c  uauuccuuauua

Annotation confidence Not enough data

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Genome context

Unknown_group_64: 7644-7763 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dps-mir-2513b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dps-miR-2513b

Accession	MIMAT0012302
Description	Drosophila pseudoobscura dps-miR-2513b mature miRNA
Sequence	77 - UAUGGUCUGAAGUUGCUUUACA - 98
Evidence	experimental Illumina [1]

References

PubMed ID: 20037610
Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
"Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
"Nat Genet (2010) 42:6-9