miRBase entry: dps-mir-2535

Stem-loop dps-mir-2535


Accession
MI0011669
Description
Drosophila pseudoobscura dps-mir-2535 precursor miRNA


Sequence

cuucaucuauccgugcacguacaucacaaagGUAAGUGGCUAUGCCGCGACGGGauugaaccucucaucucucaccUCUCACGGCAUAUCAAUCACUUGCAGuacaucaccgccgagaag
((((.((.....(((.(.((((.........((((((((.(((((((.((.(((..(((............)))))).)).)))))))....)))))))).)))).))))....))))))

Structure
    a  uaucc   c c    aucacaaag        ---C       C  C   au   accuc 
cuuc uc     gug a guac         GUAAGUGG    UAUGCCG GA GGG  uga     u
|||| ||     ||| | ||||         ||||||||    ||||||| || |||  |||      
gaag ag     cac u cauG         CGUUCACU    AUACGGC CU Ucc  acu     c
    -  -ccgc   - a    --------A        AACU       A  C   --   cucua 


Annotation confidence Not enough data
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Genome context
XL_group1a: 9058674-9058793 [+]

Database links

Mature dps-miR-2535-5p

Accession MIMAT0012324
Description Drosophila pseudoobscura dps-miR-2535-5p mature miRNA
Sequence 32 - GUAAGUGGCUAUGCCGCGACGGG - 54
Evidence experimental
Illumina [1]

Mature dps-miR-2535-3p

Accession MIMAT0012325
Description Drosophila pseudoobscura dps-miR-2535-3p mature miRNA
Sequence 77 - UCUCACGGCAUAUCAAUCACUUGCAG - 102
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9