Stem-loop dps-mir-2538

Accession

MI0011672

Description

Drosophila pseudoobscura dps-mir-2538 precursor miRNA

Sequence

gaacacuguuuuaugcgguugaaguagUAGGUGGAAGAACUAAAAUAUUuguauauuuucaauugaaUAAAUUAGAUUUUCUGCCUGCAacuucgauucgcaacgaccccuguuua
(((((..(((...((((((((((((.((((((((((((.((((..((((((............))))))..)))).)))))))))))).))))))).)))))..)))...))))).

Structure

-     -cu   uua     -       a            A    AA      uauau 
 gaaca   guu   ugcgg uugaagu gUAGGUGGAAGA CUAA  UAUUug     u
 |||||   |||   ||||| ||||||| |||||||||||| ||||  ||||||      
 uuugu   cag   acgcu agcuuca CGUCCGUCUUUU GAUU  AUaagu     u
a     ccc   -ca     u       A            A    AA      uaacu 

Annotation confidence Not enough data

Genome context

XL_group1e: 8363244-8363359 [-]

Clustered miRNAs

10 other miRNAs are < 10 kb from dps-mir-2538

Mature dps-miR-2538-5p

• Accession: MIMAT0012330
• Description: Drosophila pseudoobscura dps-miR-2538-5p mature miRNA
• Sequence: 28 - UAGGUGGAAGAACUAAAAUAUU - 49
• Evidence: experimental ; Illumina [1]

Mature dps-miR-2538-3p

• Accession: MIMAT0012331
• Description: Drosophila pseudoobscura dps-miR-2538-3p mature miRNA
• Sequence: 68 - UAAAUUAGAUUUUCUGCCUGCA - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9