miRBase entry: dps-mir-2541

Stem-loop dps-mir-2541

Accession

MI0011676

Description

Drosophila pseudoobscura dps-mir-2541 precursor miRNA

Sequence

cgaggaucgcugggacagguacuuuUAUCGAAUGUUCCAGACUUUUAGugcuaucauugcuUGAAGCUCGGACAUUUGGUAAGaauauguuccuccaagagccccuga
..(((...(((((((((.....(((((((((((((((.((.((((....((.......))..)))))).)))))))))))))))...))))))......))).)))..

Structure

cg   auc   ------      gguac               C  A    UAGu  ua 
  agg   gcu      gggaca     uuuUAUCGAAUGUUC AG CUUU    gc  u
  |||   |||      ||||||     ||||||||||||||| || ||||    ||  c
  ucc   cga      ccuugu     aGAAUGGUUUACAGG UC GAAG    cg  a
ag   --c   gaaccu      --aua               C  -    --Uu  uu

Annotation confidence Not enough data

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Genome context

XL_group1e: 8367679-8367786 [-]

Clustered miRNAs

14 other miRNAs are < 10 kb from dps-mir-2541

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dps-miR-2541-5p

Accession	MIMAT0012338
Description	Drosophila pseudoobscura dps-miR-2541-5p mature miRNA
Sequence	26 - UAUCGAAUGUUCCAGACUUUUAG - 48
Evidence	experimental Illumina [1]

Mature dps-miR-2541-3p

Accession	MIMAT0012339
Description	Drosophila pseudoobscura dps-miR-2541-3p mature miRNA
Sequence	62 - UGAAGCUCGGACAUUUGGUAAG - 83
Evidence	experimental Illumina [1]

References

PubMed ID: 20037610
Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
"Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
"Nat Genet (2010) 42:6-9