Stem-loop dps-mir-2543a-1

Accession

MI0011679

Description

Drosophila pseudoobscura dps-mir-2543a-1 precursor miRNA

Gene family

MIPF0000856; mir-2543

Sequence

ccugccagagagggcuuuugguuuAUCCUAUCUGCUGUGGUUUAUGuacaauucgaaagucaUAUGCAACGGCAGAUAGGAGCAaucauuagccacaaagccaacuauccguggga
(((((...((..(((((((((((..(((((((((((((.((.((((.((.........)))))).)).))))))))))))).........))))).))))))..))....))))).

Structure

-     -cag  ag      -     -------uA             G  U    u  aau 
 ccugc    ag  ggcuuu ugguu         UCCUAUCUGCUGU GU UAUG ac   u
 |||||    ||  |||||| |||||         ||||||||||||| || |||| ||   c
 gggug    uc  ccgaaa accga         AGGAUAGACGGCA CG AUac ug   g
a     ccua  aa      c     uuacuaACG             A  U    -  aaa 

Annotation confidence Not enough data

Genome context

Unknown_singleton_1920: 1437-1552 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dps-mir-2543a-1

Mature dps-miR-2543a-5p

• Accession: MIMAT0012344
• Description: Drosophila pseudoobscura dps-miR-2543a-5p mature miRNA
• Sequence: 25 - AUCCUAUCUGCUGUGGUUUAUG - 46
• Evidence: experimental ; Illumina [1]

Mature dps-miR-2543a-3p

• Accession: MIMAT0012345
• Description: Drosophila pseudoobscura dps-miR-2543a-3p mature miRNA
• Sequence: 63 - UAUGCAACGGCAGAUAGGAGCA - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9