Stem-loop sequence dps-mir-2543a-1

Accession MI0011679
Description Drosophila pseudoobscura miR-2543a-1 stem-loop
Gene family MIPF0000856; mir-2543
Stem-loop 
-  ug -cag  ag      -     -------ua             g  u    u  aau 
 cc  c    ag  ggcuuu ugguu         uccuaucugcugu gu uaug ac   u
 ||  |    ||  |||||| |||||         ||||||||||||| || |||| ||   c
 gg  g    uc  ccgaaa accga         aggauagacggca cg auac ug   g
a  gu ccua  aa      c     uuacuaacg             a  u    -  aaa
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Genome context
Coordinates (dpse_r2.26_FB2012_01) Overlapping transcripts
Unknown_singleton_19: 1437-1552 [+]
intergenic
Clustered miRNAs
< 10kb from dps-mir-2543a-1
dps-mir-2543a-1 Unknown_singleton_19: 1437-1552 [+]
dps-mir-2517a-1 Unknown_singleton_19: 1593-1697 [+]

Mature sequence dps-miR-2543a-5p

Accession MIMAT0012344
Previous IDs dps-miR-2543a*
Sequence

25 -  

auccuaucugcugugguuuaug

 - 46

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Evidence experimental; Solexa [1]

Mature sequence dps-miR-2543a-3p

Accession MIMAT0012345
Previous IDs dps-miR-2543a
Sequence

63 -  

uaugcaacggcagauaggagca

 - 84

Get sequence
Evidence experimental; Solexa [1]

References

1
PMID:20037610 "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila" Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC Nat Genet. 42:6-9(2010).