miRBase entry: dps-mir-2517-2

Stem-loop dps-mir-2517-2


Accession
MI0011681
Description
Drosophila pseudoobscura dps-mir-2517-2 precursor miRNA
Gene family
MIPF0000839; mir-2517


Sequence

ccgggucaaaugguccagaguuUUCAGAUCCUCAAAUACCAUAUGuauuauuugacuuucaUAUUGAUUUGGUGGAUUUGAAAAcuuuucacuuaagaacacuug
.(((((.....(((..(((((((((((((((((((((.(.(((((..............))))).))))))).)))))))))))))))..))).......)))))

Structure
c     --caaau   cc               -      A C     uauuau 
 cgggu       ggu  agaguuUUCAGAUCC UCAAAU C AUAUG      u
 |||||       |||  ||||||||||||||| |||||| | |||||       
 guuca       uca  uuucAAAAGUUUAGG GGUUUA G UAUac      u
-     caagaau   cu               U      - U     uuucag 


Annotation confidence Not enough data
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Genome context
XL_group1e: 8378028-8378132 [-]
Clustered miRNAs
9 other miRNAs are < 10 kb from dps-mir-2517-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-2517-3p

Accession MIMAT0012343
Description Drosophila pseudoobscura dps-miR-2517-3p mature miRNA
Sequence 62 - UAUUGAUUUGGUGGAUUUGAAAA - 84
Evidence experimental
Illumina [1]

Mature dps-miR-2517a*

Accession MIMAT0012342
Description Drosophila pseudoobscura dps-miR-2517a* mature miRNA
Sequence 23 - UUCAGAUCCUCAAAUACCAUAUG - 45
Evidence

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9