miRBase entry: dps-mir-2552

Stem-loop dps-mir-2552


Accession
MI0011694
Description
Drosophila pseudoobscura dps-mir-2552 precursor miRNA


Sequence

guauaugguuuuuggaagaauugUGAGGUCAAAUUGAACGCAUUUcgaguauuguugcaaAUGUGUAUAAUUUGGCCAUCAUAuuuauccaaaaugagcaucgccaaaugugc
((((((((((((((((.((((.((((((((((((((.(((((((((((......))).)))))))).)))))))))).)))))))).)))))))........))))..)))))

Structure
     --    --------       a    u    -          A        -   gu 
guaua  uggu        uuuugga gaau gUGA GGUCAAAUUG ACGCAUUU cga  a
|||||  ||||        ||||||| |||| |||| |||||||||| |||||||| |||   
cgugu  accg        aaaaccu uuuA UACU CCGGUUUAAU UGUGUAaa guu  u
     aa    cuacgagu       a    -    A          A        c   gu 


Annotation confidence Not enough data
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Genome context
3: 8679230-8679342 [+]
Clustered miRNAs
8 other miRNAs are < 10 kb from dps-mir-2552
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-2552-5p

Accession MIMAT0012364
Description Drosophila pseudoobscura dps-miR-2552-5p mature miRNA
Sequence 24 - UGAGGUCAAAUUGAACGCAUUU - 45
Evidence experimental
Illumina [1]

Mature dps-miR-2552-3p

Accession MIMAT0012365
Description Drosophila pseudoobscura dps-miR-2552-3p mature miRNA
Sequence 61 - AUGUGUAUAAUUUGGCCAUCAUA - 83
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9