miRBase entry: dps-mir-2553

Stem-loop dps-mir-2553


Accession
MI0011695
Description
Drosophila pseudoobscura dps-mir-2553 precursor miRNA


Sequence

uuuguacaccaacauuugUGCGUCUAAGAUCUGUGCAGUAUauacauacauagaauacaaaaUAUUGCAGACUUCUCAGACUACAaaugugaacugucuggucuucaaa
.(((...(((((((((((((.((((.(((..(.((((((((....................)))))))).)..))).)))))))))))))........))))...))).

Structure
u   uac    --------         C    A   UC G        auacauaca 
 uug   acca        acauuugUG GUCU AGA  U UGCAGUAU         u
 |||   ||||        ||||||||| |||| |||  | ||||||||          
 aac   uggu        uguaaACAU CAGA UCU  A ACGUUAUa         a
a   uuc    cugucaag         -    C   UC G        aaacauaag 


Annotation confidence Not enough data
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Genome context
3: 8680021-8680129 [+]
Clustered miRNAs
8 other miRNAs are < 10 kb from dps-mir-2553
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-2553-5p

Accession MIMAT0012366
Description Drosophila pseudoobscura dps-miR-2553-5p mature miRNA
Sequence 19 - UGCGUCUAAGAUCUGUGCAGUAU - 41
Evidence experimental
Illumina [1]

Mature dps-miR-2553-3p

Accession MIMAT0012367
Description Drosophila pseudoobscura dps-miR-2553-3p mature miRNA
Sequence 63 - UAUUGCAGACUUCUCAGACUACA - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9