Stem-loop dps-mir-2563

Accession

MI0011707

Description

Drosophila pseudoobscura dps-mir-2563 precursor miRNA

Sequence

ugugcgggugugugcuauauucUGAGUAUUGCCUCCUGUUGUAGUuguggaauauugaaauaucaacUAUACGGUUCGGAAUCCUCUAAauauggcagccacuaaagacaa
(((...((((..(((((((((..(((.(((.(...((((.(((((((................)))))))))))...).))).)))..)))))))))..))))....))).

Structure

-   -gcg    ug         cU   U   G CUC    U       uggaaua 
 ugu    ggug  ugcuauauu  GAG AUU C   CUGU GUAGUug       u
 |||    ||||  |||||||||  ||| ||| |   |||| |||||||        
 aca    ucac  acgguauaA  CUC UAA G   GGCA UAUcaac       u
a   gaaa    cg         AU   C   G CUU    -       uauaaag 

Annotation confidence Not enough data

Genome context

4_group4: 3182462-3182572 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from dps-mir-2563

Mature dps-miR-2563-5p

• Accession: MIMAT0012388
• Description: Drosophila pseudoobscura dps-miR-2563-5p mature miRNA
• Sequence: 23 - UGAGUAUUGCCUCCUGUUGUAGU - 45
• Evidence: experimental ; Illumina [1]

Mature dps-miR-2563-3p

• Accession: MIMAT0012389
• Description: Drosophila pseudoobscura dps-miR-2563-3p mature miRNA
• Sequence: 68 - UAUACGGUUCGGAAUCCUCUAA - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9