Stem-loop sequence dps-mir-2543a-2

Accession

MI0011724

Description

Drosophila pseudoobscura miR-2543a-2 stem-loop

Gene family

MIPF0000856; mir-2543

Stem-loop

-  ug -cag  ag      -     -------ua             g  u    u  aau 
 cc  c    ag  ggcuuu ugguu         uccuaucugcugu gu uaug ac   u
 ||  |    ||  |||||| |||||         ||||||||||||| || |||| ||   c
 gg  g    uc  ccgaaa accga         aggauagacggca cg auac ug   g
a  gu ccua  aa      c     uuacuaacg             a  u    -  aaa 

Genome context

• Coordinates (dpse_r2.26_FB2012_01): XL_group1e: 8373978-8374093 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dps-mir-2543a-2

• dps-mir-2543b-1: XL_group1e: 8380575-8380690 [-]
• dps-mir-2517a-3: XL_group1e: 8380430-8380532 [-]
• dps-mir-2544: XL_group1e: 8378925-8379029 [-]
• dps-mir-2542-3: XL_group1e: 8378579-8378663 [-]
• dps-mir-2543b-2: XL_group1e: 8378173-8378288 [-]
• dps-mir-2517a-2: XL_group1e: 8378028-8378132 [-]
• dps-mir-2524: XL_group1e: 8377507-8377599 [-]
• dps-mir-2542-2: XL_group1e: 8376961-8377045 [-]
• dps-mir-2524: XL_group1e: 8376659-8376751 [-]
• dps-mir-2543a-2: XL_group1e: 8373978-8374093 [-]
• dps-mir-2542-1: XL_group1e: 8373614-8373698 [-]
• dps-mir-2541: XL_group1e: 8367679-8367786 [-]
• dps-mir-2540: XL_group1e: 8367333-8367441 [-]
• dps-mir-2523: XL_group1e: 8366995-8367108 [-]
• dps-mir-2539: XL_group1e: 8366678-8366788 [-]
• dps-mir-2522a: XL_group1e: 8365900-8366011 [-]

Mature sequence dps-miR-2543a-5p

• Accession: MIMAT0012344
• Previous IDs: dps-miR-2543a*
• Sequence: 25 - auccuaucugcugugguuuaug - 46
• Evidence: experimental; Solexa [1]

Mature sequence dps-miR-2543a-3p

• Accession: MIMAT0012345
• Previous IDs: dps-miR-2543a
• Sequence: 63 - uaugcaacggcagauaggagca - 84
• Evidence: experimental; Solexa [1]

References

1. PMID:20037610 "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila" Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC Nat Genet. 42:6-9(2010).