miRBase entry: dps-mir-2517-3

Stem-loop dps-mir-2517-3

Accession

MI0011725

Description

Drosophila pseudoobscura dps-mir-2517-3 precursor miRNA

Gene family

MIPF0000839; mir-2517

Sequence

gggugaaaugguccagaguuUUCAGAUCCUCAAAUACCAUAUGuauuauuugacuuucaUAUUGAUUUGGUGGAUUUGAAAAcuuuucaccacauauacaucc
(((((...((((..(((((((((((((((((((((.(.(((((..............))))).))))))).)))))))))))))))..))))......)))))

Structure

     ---aaa    cc               -      A C     uauuau 
gggug      uggu  agaguuUUCAGAUCC UCAAAU C AUAUG      u
|||||      ||||  ||||||||||||||| |||||| | |||||       
ccuac      acca  uuucAAAAGUUUAGG GGUUUA G UAUac      u
     auauac    cu               U      - U     uuucag

Annotation confidence Not enough data

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Genome context

XL_group1e: 8380430-8380532 [-]

Clustered miRNAs

9 other miRNAs are < 10 kb from dps-mir-2517-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dps-miR-2517-3p

Accession	MIMAT0012343
Description	Drosophila pseudoobscura dps-miR-2517-3p mature miRNA
Sequence	60 - UAUUGAUUUGGUGGAUUUGAAAA - 82
Evidence	experimental Illumina [1]

Mature dps-miR-2517a*

Accession	MIMAT0012342
Description	Drosophila pseudoobscura dps-miR-2517a* mature miRNA
Sequence	21 - UUCAGAUCCUCAAAUACCAUAUG - 43
Evidence

References

PubMed ID: 20037610
Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
"Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
"Nat Genet (2010) 42:6-9