Stem-loop sequence dps-mir-2517a-3

Accession

MI0011725

Description

Drosophila pseudoobscura miR-2517a-3 stem-loop

Gene family

MIPF0000839; mir-2517

Stem-loop

     ---aaa    cc               -      a c     uauuau 
gggug      uggu  agaguuuucagaucc ucaaau c auaug      u
|||||      ||||  ||||||||||||||| |||||| | |||||       
ccuac      acca  uuucaaaaguuuagg gguuua g uauac      u
     auauac    cu               u      - u     uuucag 

Genome context

• Coordinates (dpse_r2.26_FB2012_01): XL_group1e: 8380430-8380532 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dps-mir-2517a-3

• dps-mir-2543b-1: XL_group1e: 8380575-8380690 [-]
• dps-mir-2517a-3: XL_group1e: 8380430-8380532 [-]
• dps-mir-2544: XL_group1e: 8378925-8379029 [-]
• dps-mir-2542-3: XL_group1e: 8378579-8378663 [-]
• dps-mir-2543b-2: XL_group1e: 8378173-8378288 [-]
• dps-mir-2517a-2: XL_group1e: 8378028-8378132 [-]
• dps-mir-2524: XL_group1e: 8377507-8377599 [-]
• dps-mir-2542-2: XL_group1e: 8376961-8377045 [-]
• dps-mir-2524: XL_group1e: 8376659-8376751 [-]
• dps-mir-2543a-2: XL_group1e: 8373978-8374093 [-]
• dps-mir-2542-1: XL_group1e: 8373614-8373698 [-]

Mature sequence dps-miR-2517a-5p

• Accession: MIMAT0012342
• Previous IDs: dps-miR-2517a*
• Sequence: 21 - uucagauccucaaauaccauaug - 43
• Evidence: experimental; Solexa [1]

Mature sequence dps-miR-2517a-3p

• Accession: MIMAT0012343
• Previous IDs: dps-miR-2517a
• Sequence: 60 - uauugauuugguggauuugaaaa - 82
• Evidence: experimental; Solexa [1]

References

1. PMID:20037610 "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila" Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC Nat Genet. 42:6-9(2010).