Stem-loop dsi-mir-960

Accession

MI0011766

Description

Drosophila simulans dsi-mir-960 precursor miRNA

Gene family

MIPF0000897; mir-960

Sequence

cggguuuuguaccacauucAGAGUAUUCCAGGUUGCAUAGCUUugugcuacuauugcuguacgaucugggacacuuuuaacaugguaucaaaucuga
(((((((.((((((..((.(((((.((((((((((.(((((..((......))..))))).)))))))))).))))).))..)))))).))))))).

Structure

-       u      ca  c     A          C     UU  ug 
 cggguuu guacca  uu AGAGU UUCCAGGUUG AUAGC  ug  c
 ||||||| ||||||  || ||||| |||||||||| |||||  ||   
 gucuaaa uauggu  aa uuuca agggucuagc ugucg  au  u
a       c      ac  u     c          a     uu  ca 

Annotation confidence Not enough data

Genome context

chr2L: 5434148-5434244 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from dsi-mir-960

Mature dsi-miR-960

• Accession: MIMAT0012495
• Description: Drosophila simulans dsi-miR-960 mature miRNA
• Sequence: 20 - AGAGUAUUCCAGGUUGCAUAGCUU - 43
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9