miRBase entry: dsi-mir-962

Stem-loop dsi-mir-962


Accession
MI0011767
Description
Drosophila simulans dsi-mir-962 precursor miRNA
Gene family
MIPF0001011; mir-962


Sequence

cgauggggcgcucaggcuAUAAGGUAGAGAAAUUGAUGUUGUCuacacuauucagacuucaguuucauugccuuucaauuuguuugccccccug
....((((((..((((....(((((((.((((((((.(((..............))).)))))))).)))))))....))))..))))))....

Structure
cgau      cu    cuAU       A        U   GUCuac 
    ggggcg  cagg    AAGGUAG GAAAUUGA GUU      a
    ||||||  ||||    ||||||| |||||||| |||       
    ccccgu  guuu    uuccguu cuuugacu cag      c
gucc      uu    aacu       a        u   acuuau 


Annotation confidence Not enough data
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Genome context
chr2L: 5434384-5434477 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from dsi-mir-962
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dsi-miR-962

Accession MIMAT0012496
Description Drosophila simulans dsi-miR-962 mature miRNA
Sequence 19 - AUAAGGUAGAGAAAUUGAUGUUGUC - 43
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9