miRBase entry: dsi-mir-1001

Stem-loop dsi-mir-1001


Accession
MI0011776
Description
Drosophila simulans dsi-mir-1001 precursor miRNA
Gene family
MIPF0001048; mir-1001


Sequence

gcccgcgaugauguaagcuggccugucccUGGGUAAACUCCCAAGGAUCAGGuggagauugaauccCGAUCCUUGGGUUUCUGCUCUCGggcaaggucagcagugcccgcgaagggcc
((((.((.((..(((.((((((((((((..(((((....((((((((((.((............)).))))))))))....)))))..)))).))))))))..))).))))..)))).

Structure
-    -g  a  au   -a        -    cU     AACU          A  uggag 
 gccc  cg ug  gua  gcuggccu gucc  GGGUA    CCCAAGGAUC GG     a
 ||||  || ||  |||  |||||||| ||||  |||||    |||||||||| ||      
 cggg  gc gc  cgu  cgacugga cggG  CUCGU    GGGUUCCUAG cc     u
c    aa  -  -c   ga        a    CU     CUUU          C  uaagu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature dsi-miR-1001-5p

Accession MIMAT0012506
Description Drosophila simulans dsi-miR-1001-5p mature miRNA
Sequence 30 - UGGGUAAACUCCCAAGGAUCAGG - 52
Evidence experimental
Illumina [1]

Mature dsi-miR-1001-3p

Accession MIMAT0012507
Description Drosophila simulans dsi-miR-1001-3p mature miRNA
Sequence 67 - CGAUCCUUGGGUUUCUGCUCUCG - 89
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9