Stem-loop sequence mtr-MIR2585a

Accession

MI0011796 (change log)

Description

Medicago truncatula miR2585a stem-loop

Gene family

MIPF0000820; MIR2585

Stem-loop

   -                                u         auugcaaacuaa       auca                  a  a   ga  a          c          uuauuugaugacgucgcaaucacugccacacaugaaauuccaauuuugcccuuaa 
5'  aauuaggggucguuuaaaaauuggucccugua ucgcuaauc            ccuugca    uuaaucauuuaaaauuuc uc uuu  cc acuuaaucac gccacgucac                                                       g
    |||||||||||||||||||||||||||||||| |||||||||            |||||||    |||||||||||||||||| || |||  || |||||||||| ||||||||||                                                       a
3'  uuaauccccagcaaauuuuuaaccagggacau agcgauuag            ggaacgu    aauuaguaaauuuuaaag ag gag  gg ugaauuagug cggugcggug                                                       a
   g                                u         gaccauuaaaug       aaca                  c  a   ag  g          a          uauuuuaagguuaaaauggggacccaagguuaagaaagaaguuauaaaacaggag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr4: 15526071-15526416 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011796

Mature sequence mtr-miR2585a

• Accession: MIMAT0013249
• Sequence: 301 - caggauuagcgauuacagggac - 322
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).