Stem-loop mtr-MIR2586a

Accession

MI0011798

Description

Medicago truncatula mtr-MIR2586a precursor miRNA

Sequence

augacaaccuaugaagcacggauacggacacggacaccggacacgacacagacacgccgacacaacuaauaauuugaaaauaucacauuaucugguguaauuacaagugucggugucaugucgguaucggacacgacacguguccgacacugggacacgccuaaucCGAGGAGUGUCCGUGCUUCAUagaugacaa
........(((((((((((((((((...(.((((.((((.(((.(((((.(((((.........(((((((((.(((.....))).))))).))))..........))))).))))).))))))).(((((((((...)))))))))...((((.....)))).)))).)..))))))))))))))))).......

Structure

augacaac                 gga a    --------------------------------------c    g   c     a     -gccgacaca    -     u   a 
        cuaugaagcacggauac   c cgga                                       accg aca gacac gacac          acua auaau uga a
        |||||||||||||||||   | ||||                                       |||| ||| ||||| |||||          |||| ||||| ||| a
        gaUACUUCGUGCCUGUG   G GCcu                                       uggc ugu cugug cugug          uggu uauua acu u
-aacagua                 -AG A    aauccgcacagggucacagccugugcacagcacaggcua    -   a     g     aacauuaaug    c     c   a 

Annotation confidence Not enough data

Genome context

chr2: 20061144-20061339 [+]

Mature mtr-miR2586a

• Accession: MIMAT0013251
• Description: Medicago truncatula mtr-miR2586a mature miRNA
• Sequence: 167 - CGAGGAGUGUCCGUGCUUCAU - 187
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796