Stem-loop sequence mtr-MIR2587a

Accession

MI0011799 (change log)

Description

Medicago truncatula miR2587a stem-loop

Gene family

MIPF0000835; MIR2587

Stem-loop

   -cgaug      -u    a            c          ug  --------au     
5'       guguca  gguc uuguugaccguu auaugaaccc  ca          ugca 
         ||||||  |||| |||||||||||| ||||||||||  ||          ||| a
3'       uacagu  ccag gauaacuggcaa uauacuuggg  gu          acgu 
   agaaaa      uc    a            -          gu  guucaauuuu     

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr7: 26611343-26611452 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011799

Mature sequence mtr-miR2587a

• Accession: MIMAT0013252
• Sequence: 21 - uugaccguucauaugaacccug - 42
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).