miRBase entry: mtr-MIR2587d

Stem-loop mtr-MIR2587d


Accession
MI0011802
Description
Medicago truncatula mtr-MIR2587d precursor miRNA
Gene family
MIPF0000835; MIR2587


Sequence

uuguggugucauggucauugUUGACCGUUCAUAUGAACCCUGcaauagcauugcagcuugugugggguucauauaacggucaacauagaccauugacauaaaaaguagacacaaa
((((((((((((((((..(((((((((((.((((((((((((((..(((......)))..)))))))))))))))))))))))))..))))).))))))..........))))).

Structure
-     ----------      -     au           C              au   au 
 uugug          guguca ugguc  ugUUGACCGUU AUAUGAACCCUGca  agc  u
 |||||          |||||| |||||  ||||||||||| ||||||||||||||  |||   
 aacac          uacagu accag  acaacuggcaa uauacuuggggugu  ucg  g
a     agaugaaaaa      u     au           -              gu   ac 


Annotation confidence Not enough data
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Genome context
chr8: 20166370-20166484 [+]

Database links

Mature mtr-miR2587d

Accession MIMAT0013255
Description Medicago truncatula mtr-miR2587d mature miRNA
Sequence 21 - UUGACCGUUCAUAUGAACCCUG - 42
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796