Stem-loop sequence mtr-MIR2588a

Accession

MI0011805 (change log)

Description

Medicago truncatula miR2588a stem-loop

Gene family

MIPF0001030; MIR2588

Stem-loop

   -                         c                         aaaacauuuauuuucuuaaaacaaaacacuuaacacauuacauuaauguuacacucaacaauguuucaucgucuaacaugauugcacgcuuaaauuaaacuaaaaaaaacaacauguuacaaggauuguucacuuuacuugaauaaauaucaagc 
5'  agauagguccuuuaacuuuguaaca ugugcaacuaaguccuuccguuaac                                                                                                                                                           u
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3'  ucuauccaggaaauugaaacauugu auauguugauucaggaaggcaauug                                                                                                                                                           u
   g                         c                         aguggcaguuuuuuugcgacugcacugagacuucagacacuacaccguacguuuuccguuuuuguacaauaauuaaccuuuuacaauacuaauaaaaacuucuaacgacuacauugaacguacaacaaccgaaauugaacacaauaacguuguua 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (JCVI_Mt3.5.2): chr5: 7675732-7676146 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011805

Mature sequence mtr-miR2588a

• Accession: MIMAT0013258
• Sequence: 21 - uaacacugugcaacuaagucc - 41
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).