miRBase entry: mtr-MIR2588a

Stem-loop mtr-MIR2588a


Accession
MI0011805
Description
Medicago truncatula mtr-MIR2588a precursor miRNA
Gene family
MIPF0001030; MIR2588


Sequence

agauagguccuuuaacuuugUAACACUGUGCAACUAAGUCCuuccguuaacaaaacauuuauuuucuuaaaacaaaacacuuaacacauuacauuaauguuacacucaacaauguuucaucgucuaacaugauugcacgcuuaaauuaaacuaaaaaaaacaacauguuacaaggauuguucacuuuacuugaauaaauaucaagcuuauuguugcaauaacacaaguuaaagccaacaacaugcaaguuacaucagcaaucuucaaaaauaaucauaacauuuuccaauuaauaacauguuuuugccuuuugcaugccacaucacagacuucagagucacgucagcguuuuuuugacggugaguuaacggaaggacuuaguuguauacuguuacaaaguuaaaggaccuaucug
(((((((((((((((((((((((((.(((((((((((((((((((((((((......((((......))))..............((((((...))))))................(((((((((((((((.(((.........................)))))))))).(((((....)).)))..(((((.......)))))....(((((((..((((....))))..).))))))((((((((...((..((((.......................................))))..))...))))))))..........((((....))))(((....)))......))))))))))))))))))))))))))))))))).))))))))))))))))))))))))).

Structure
-                         C                         aaaacauuuauuuucuuaaaacaaaacacuuaacacauuacauuaauguuacacucaacaauguu        uaacaugauugcacgcuuaaauuaaacuaaaaaaaacaacauguuacaaggauuguucacuuuacuugaauaaauaucaagcuuauuguugcaauaacacaaguuaaagccaacaa        uua  uc    aucuucaaaaauaaucau 
 agauagguccuuuaacuuugUAACA UGUGCAACUAAGUCCuuccguuaac                                                                 ucaucguc                                                                                                                    caugcaag   ca  agca                  a
 ||||||||||||||||||||||||| |||||||||||||||||||||||||                                                                 ||||||||                                                                                                                    ||||||||   ||  ||||                  a
 ucuauccaggaaauugaaacauugu auauguugauucaggaaggcaauug                                                                 aguggcag                                                                                                                    guacguuu   gu  uugu                  c
g                         c                         -----------------------------------------------------------------        ------------------------------------------------------------------------------uuuuuuugcgacugcacugagacuucagacacuacacc        ucc  uu    acaauaauuaaccuuuua 


Annotation confidence Not enough data
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Genome context
chr5: 7675732-7676146 [-]

Database links

Mature mtr-miR2588a

Accession MIMAT0013258
Description Medicago truncatula mtr-miR2588a mature miRNA
Sequence 21 - UAACACUGUGCAACUAAGUCC - 41
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796