miRBase entry: mtr-MIR2588b

Stem-loop mtr-MIR2588b


Accession
MI0011806
Description
Medicago truncatula mtr-MIR2588b precursor miRNA
Gene family
MIPF0001030; MIR2588


Sequence

agauaaguccuuuaacuuugUAACACUGUGCAACUAAGUCCuuccguuaacaaaauauuuauuuucuuaaaacaaaacacuuaacacauuacauuaauguuacacucaacaauguuucaucgucuaacaugauugcacgcuuaaauuaaacuaaaaaaaacaacauguuacaaggauuauucacuuuacuugauuaaauaucaagcuuauuguugcaauaacauaaguuaaagccaacaacaugcaaguuacauuagcaaucuucaaaaauaaucauaacauuuuccaauuaauaacauguuuuugccuuuugcaugccacaucacagacuucacagccacgucagcguuuuuuugacggugaguuaacggaaggacuuaguuguauacuguuacaaaguuaaaggaccuaucug
(((((.(((((((((((((((((((.(((((((((((((((((((((((((......((((......))))..............((((((...))))))................(((((((((((((((.(((.........................)))))))))).(((((....)).)))..((((((.....))))))....(((((((..((((....))))..).))))))((((((((...((..((((.......................................))))..))...))))))))..........(((...........)))...........))))))))))))))))))))))))))))))))).))))))))))))))))))).))))).

Structure
-     a                   C                         aaaauauuuauuuucuuaaaacaaaacacuuaacacauuacauuaauguuacacucaacaauguu        uaacaugauugcacgcuuaaauuaaacuaaaaaaaacaacauguuacaaggauuauucacuuuacuugauuaaauaucaagcuuauuguugcaauaacauaaguuaaagccaacaa        uua  uu    aucuucaaaaauaaucau 
 agaua guccuuuaacuuugUAACA UGUGCAACUAAGUCCuuccguuaac                                                                 ucaucguc                                                                                                                    caugcaag   ca  agca                  a
 ||||| ||||||||||||||||||| |||||||||||||||||||||||||                                                                 ||||||||                                                                                                                    ||||||||   ||  ||||                  a
 ucuau caggaaauugaaacauugu auauguugauucaggaaggcaauug                                                                 aguggcag                                                                                                                    guacguuu   gu  uugu                  c
g     c                   c                         -----------------------------------------------------------------        ------------------------------------------------------------------------------uuuuuuugcgacugcaccgacacuucagacacuacacc        ucc  uu    acaauaauuaaccuuuua 


Annotation confidence Not enough data
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Genome context
chr8: 14068100-14068514 [-]

Database links

Mature mtr-miR2588b

Accession MIMAT0013259
Description Medicago truncatula mtr-miR2588b mature miRNA
Sequence 21 - UAACACUGUGCAACUAAGUCC - 41
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796