Stem-loop mtr-MIR2589

Accession

MI0011807

Description

Medicago truncatula mtr-MIR2589 precursor miRNA

Sequence

uguuggugauuaagcaaacggugaagcacacauggaugccacaccugacuuuuuuauuuuuuguuaaauauauuuuuaaucccuauaaaauuaagguauuuuaaguuuuuauuccuuacaaaaauauuaugcacucaguauuagucccugcucaauucaacuauuaaaauuaaacaaauuugaauugagcagagacuaauacugagugcauaguauuuuuguaaugacuaaaacaacuauuaaaauuaaguaaggacuaaacuuaaaaugucucaauuuuauagggacuaaaaacauauuuaacccaacaaaaaaaagucagauguGGCAUCCACGUGUGCUUCACCGuuugcucaaucaacaacg
.((((.(((((.(((((((((((((((((((.(((((((((((.(((((((((((.......(((((((((.((((((.(((((((((((((.(((((((((((((((....((((((((((((((((((((((((((((((((((.(((((((((((((...................))))))))))))).)))))))))))))))))))))))))))))).............................))))..))))))))))))))).))))))))))))).)))))).))))))))).......))))))))))).))))))))))).))))))))))))))))))).))))).)))).

Structure

u    g     a                   a           c           auuuuuu         a      a             a               uuau    -----------------------------                              c             cuauuaaa 
 guug ugauu agcaaacggugaagcacac uggaugccaca cugacuuuuuu       guuaaauau uuuuua ucccuauaaaauu agguauuuuaaguuu    uccu                             uacaaaaauauuaugcacucaguauuaguc cugcucaauucaa        a
 |||| ||||| ||||||||||||||||||| ||||||||||| |||||||||||       ||||||||| |||||| ||||||||||||| |||||||||||||||    ||||                             |||||||||||||||||||||||||||||| |||||||||||||        u
 caac acuaa ucguuuGCCACUUCGUGUG ACCUACGGugu gacugaaaaaa       caauuuaua aaaaau agggauauuuuaa ucuguaaaauucaaa    agga                             auguuuuuaugauacgugagucauaaucag gacgaguuaaguu        u
g    a     c                   C           a           aacaacc         c      c             c               --uc    augaauuaaaauuaucaacaaaaucagua                              a             uaaacaaa 

Annotation confidence Not enough data

Genome context

chr3: 41740729-41741094 [+]

Mature mtr-miR2589

• Accession: MIMAT0013260
• Description: Medicago truncatula mtr-miR2589 mature miRNA
• Sequence: 327 - GGCAUCCACGUGUGCUUCACCG - 348
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796