Stem-loop sequence mtr-MIR2590d

Accession

MI0011811 (change log)

Description

Medicago truncatula miR2590d stem-loop

Gene family

MIPF0000834; MIR2590

Literature search

1 open access papers mention mtr-MIR2590d
(1 sentences)

Stem-loop

   c    aaau                  g          c         aucaagaaauagucuugaaacuaauguuagccaauaaaaucucagccuggucgga 
5'  aaga    uucaagaaugacauggca aauaaucacc uuagauuuu                                                       a
    ||||    |||||||||||||||||| |||||||||| |||||||||                                                        
3'  uucu    aaguucuuacuguaccgu uuauuagugg aaucuaaag                                                       a
   u    ----                  g          a         ucagaguaaauaauuagaaaguauuuuuuuuuauguauugugggugguggguacu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr5: 7888321-7888524 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011811

Mature sequence mtr-miR2590d

• Accession: MIMAT0013264
• Sequence: 164 - aucuaaaggugauuauugugcc - 185
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).