miRBase entry: mtr-MIR2592b

Stem-loop mtr-MIR2592b


Accession
MI0011815
Description
Medicago truncatula mtr-MIR2592b precursor miRNA
Gene family
MIPF0000815; MIR2592

Literature search
1 open access papers mention mtr-MIR2592b
(2 sentences)

Sequence

aaauucaaaccugcaaaACAACAGGACUCAAGCAUUUCgccaaacaccucauguuuucccuuugaaaauaauaaauuuuugugaggcuugcuuuagaugaugguauucaagugccaccgaauugagguucaauccuugacacuuaauaccuucaucuaaaccagcauaacaaaaauuuaauauuuucaaaggagaaacaugaggugcuugcgAAAUGCUUGAGUCCUGUUGUUugacaaguuugaauua
.(((((((((.((..(((((((((((((((((((((((((.((.(((((((((((((.((((((((((((.(((((((((((...(((.(.(((((((((.((((((.(((((.((..((.((((...))))))..)).))))))))))).)))))))))).)))...))))))))))).)))))))))))).))))))))))))).)))))))))))))))))))))))))))..)).))))))))).

Structure
a         c  ca                         c  a             c            a           gag   u c         u      c     c  cc  a    g 
 aauucaaac ug  aaACAACAGGACUCAAGCAUUUCgc aa caccucauguuuu ccuuugaaaaua uaaauuuuugu   gcu g uuuagauga gguauu aagug ca  ga uuga  
 ||||||||| ||  ||||||||||||||||||||||||| || ||||||||||||| |||||||||||| |||||||||||   ||| | ||||||||| |||||| ||||| ||  || |||| g
 uuaaguuug ac  uUUGUUGUCCUGAGUUCGUAAAgcg uu guggaguacaaag ggaaacuuuuau auuuaaaaaca   cga c aaaucuacu ccauaa uucac gu  cu aacu  
a         a  ag                         -  c             a            a           aua   c -         u      -     a  uc  -    u 


Annotation confidence Not enough data
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Genome context
chr2: 4195488-4195736 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR2592b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR2592b-3p

Accession MIMAT0013268
Description Medicago truncatula mtr-miR2592b-3p mature miRNA
Sequence 213 - AAAUGCUUGAGUCCUGUUGUU - 233
Evidence experimental
454 [1], Illumina [2]

Mature mtr-miR2592b-5p

Accession MIMAT0026924
Description Medicago truncatula mtr-miR2592b-5p mature miRNA
Sequence 18 - ACAACAGGACUCAAGCAUUUC - 38
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796

  2. PubMed ID: 23572382
    microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
    "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
    "Planta (2013) 238:91-105