Stem-loop sequence mtr-MIR2592c

Accession MI0011816
Description Medicago truncatula miR2592c stem-loop
Gene family MIPF0000815; MIR2592
Stem-loop 
a         c  ca                         c  a            uc            a           gag   u c         u      c     ccaccgaa ug   uu 
 aauucaaac ug  aaacaacaggacucaagcauuucgc aa caccucauguuu  ccuuugaaaaua uaaauuuuugu   gcu g uuuagauga gguauu aagug        u  agg  c
 ||||||||| ||  ||||||||||||||||||||||||| || ||||||||||||  |||||||||||| |||||||||||   ||| | ||||||||| |||||| |||||        |  |||   
 uuaaguuug ac  uuuguuguccugaguucguaaagcg uu guggaguacaaa  ggaaacuuuuau auuuaaaaaca   cga c aaaucuacu ccauaa uucac        a  ucc  a
a         a  ag                         -  c            ga            a           aua   c -         u      -     -------- gu   ua
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Genome context
Coordinates (Mt3.0) Overlapping transcripts
MtChr2: 4432349-4432597 [+]
intergenic
Clustered miRNAs
< 10kb from mtr-MIR2592c
mtr-MIR2592c MtChr2: 4432349-4432597 [+]
mtr-MIR2592v MtChr2: 4432365-4432582 [-]

Mature sequence mtr-miR2592c

Accession MIMAT0013269
Sequence

213 -  

aaaugcuugaguccuguuguu

 - 233

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Evidence experimental; 454 [1]

References

1
PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).