miRBase entry: mtr-MIR2592i

Stem-loop mtr-MIR2592i


Accession
MI0011820
Description
Medicago truncatula mtr-MIR2592i precursor miRNA
Gene family
MIPF0000815; MIR2592

Literature search
1 open access papers mention mtr-MIR2592i
(2 sentences)

Sequence

ugggauaaauucaaaccugcaaaacaacaggacucaagcauuucgccaaacaccucauguuuucccuuugaaaauaauaaauuuuugugaggcuugcuuuagaugaugguauucaagugccaccgaauugagguucaauccuugacacuuaauaccuucaucuaaaccagcauaacaaaaauuuaauauuuucaaaggagaaacaugaggugcuugcgAAAUGCUUGAGUCCUGUUGUUugacaaguuugaauuaccu
.(((...(((((((((.((..(((((((((((((((((((((((((.((.(((((((((((((.((((((((((((.(((((((((((...(((.(.(((((((((.((((((.(((((.((..((.((((...))))))..)).))))))))))).)))))))))).)))...))))))))))).)))))))))))).))))))))))))).)))))))))))))))))))))))))))..)).))))))))).)))

Structure
u   aua         c  ca                         c  a             c            a           gag   u c         u      c     c  cc  a    g 
 ggg   aauucaaac ug  aaacaacaggacucaagcauuucgc aa caccucauguuuu ccuuugaaaaua uaaauuuuugu   gcu g uuuagauga gguauu aagug ca  ga uuga  
 |||   ||||||||| ||  ||||||||||||||||||||||||| || ||||||||||||| |||||||||||| |||||||||||   ||| | ||||||||| |||||| ||||| ||  || |||| g
 ucc   uuaaguuug ac  uUUGUUGUCCUGAGUUCGUAAAgcg uu guggaguacaaag ggaaacuuuuau auuuaaaaaca   cga c aaaucuacu ccauaa uucac gu  cu aacu  
-   --a         a  ag                         -  c             a            a           aua   c -         u      -     a  uc  -    u 


Annotation confidence Not enough data
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Genome context
chr3: 41946048-41946305 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR2592i
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR2592i

Accession MIMAT0013273
Description Medicago truncatula mtr-miR2592i mature miRNA
Sequence 219 - AAAUGCUUGAGUCCUGUUGUU - 239
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796