Stem-loop sequence mtr-MIR2592r

AccessionMI0011825 (change log)
DescriptionMedicago truncatula miR2592r stem-loop
Gene family MIPF0000815; MIR2592
Literature search

1 open access papers mention mtr-MIR2592r
(2 sentences)

Stem-loop
   u   aua         c  ca                         c  a            uc            a           gag   u c         u      c     ccaccgaa ug   uu 
5'  ggg   aauucaaac ug  aaacaacaggacucaagcauuucgc aa caccucauguuu  ccuuugaaaaua uaaauuuuugu   gcu g uuuagauga gguauu aagug        u  agg  c
    |||   ||||||||| ||  ||||||||||||||||||||||||| || ||||||||||||  |||||||||||| |||||||||||   ||| | ||||||||| |||||| |||||        |  |||   
3'  ucc   uuaaguuug ac  uuuguuguccugaguucguaaagcg uu guggaguacaaa  ggaaacuuuuau auuuaaaaaca   cga c aaaucuacu ccauaa uucac        a  ucc  a
   -   --a         a  ag                         -  c            ga            a           aua   c -         u      -     -------- gu   ua 
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (JCVI_Mt3.5.2) Overlapping transcripts
chr7: 7995654-7995911 [+]
intergenic
Clustered miRNAs
< 10kb from mtr-MIR2592r
mtr-MIR2592rchr7: 7995654-7995911 [+]
mtr-MIR2592xchr7: 7995676-7995893 [-]
Database links

Mature sequence mtr-miR2592r

Accession MIMAT0013278
Sequence

219 - 

aaaugcuugaguccuguuguu

 - 239

Get sequence
Evidence experimental; 454 [1]

References

1
PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).