Stem-loop sequence mtr-MIR2596

Accession

MI0011833 (change log)

Description

Medicago truncatula miR2596 stem-loop

Stem-loop

   g        -              u       u          uuucu 
5'  uuggguug caaaagggaucuau ucauugu ccacacauuu     u
    |||||||| |||||||||||||| ||||||| ||||||||||      
3'  aacccaac guuuuuucuagaua aguaaua gguguguaaa     g
   a        u              u       -          uccaa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr3: 22399309-22399404 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mtr-MIR2596

• mtr-MIR5210: chr3: 22394767-22394883 [+]
• mtr-MIR2596: chr3: 22399309-22399404 [+]

Database links

• miRBase Tracker:MI0011833

Mature sequence mtr-miR2596

• Accession: MIMAT0013286
• Sequence: 19 - ucuauuucauuguuccacaca - 39
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).