Stem-loop sequence mtr-MIR2111c

Accession

MI0011836 (change log)

Description

Medicago truncatula miR2111c stem-loop

Gene family

MIPF0000754; MIR2111

Literature search

2 open access papers mention mtr-MIR2111c
(8 sentences)

Stem-loop

   -ag     -   c  -au              c            -   aucga 
5'    auugg gau ag   gagauaaucugcau cugagguuuaga aca     u
      ||||| ||| ||   |||||||||||||| |||||||||||| |||     g
3'    uaacc cua uc   cucuauuagacgua gauuccgaaucu ugu     c
   acg     a   u  cuu              a            a   caaug 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr7: 16686087-16686193 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mtr-MIR2111c

• mtr-MIR2111b: chr7: 16691057-16691162 [-]
• mtr-MIR2111c: chr7: 16686087-16686193 [-]
• mtr-MIR2111d: chr7: 16685914-16686016 [-]
• mtr-MIR2111e: chr7: 16678770-16678875 [-]

Database links

• miRBase Tracker:MI0011836

Mature sequence mtr-miR2111c

• Accession: MIMAT0013289
• Sequence: 20 - uaaucugcauccugagguuua - 40
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).