Stem-loop mtr-MIR2111d

Accession

MI0011838

Description

Medicago truncatula mtr-MIR2111d precursor miRNA

Gene family

MIPF0000754; MIR2111

Literature search

2 open access papers mention mtr-MIR2111d
(8 sentences)

Sequence

auauuggguaaggauuagaUAAUCUGCAUCCUGAGGUUUAuagcaauauuuuaguugucuuuaAUCCUUAGAAUGCAGAUUAUCcuuuccuuaaugccaaugg
.((((((.((((((...((((((((((((.((((((.(((.((((((......)))).)).))).)))))).))))))))))))...))))))...)))))).

Structure

a      --g      uua            C      U   u  -    au 
 uauugg   uaagga   gaUAAUCUGCAU CUGAGG UUA ag caau  u
 ||||||   ||||||   |||||||||||| |||||| ||| || ||||   
 guaacc   auuccu   CUAUUAGACGUA GAUUCC Aau uc guug  u
g      gua      uuc            A      U   u  u    au 

Annotation confidence Not enough data

Genome context

Unknown

Mature mtr-miR2111d-5p

• Accession: MIMAT0013291
• Description: Medicago truncatula mtr-miR2111d-5p mature miRNA
• Sequence: 20 - UAAUCUGCAUCCUGAGGUUUA - 40
• Evidence: experimental ; 454 [1], Illumina [2]

Mature mtr-miR2111d-3p

• Accession: MIMAT0026926
• Description: Medicago truncatula mtr-miR2111d-3p mature miRNA
• Sequence: 64 - AUCCUUAGAAUGCAGAUUAUC - 84
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796


2. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105