Stem-loop mtr-MIR2111e

Accession

MI0011839

Description

Medicago truncatula mtr-MIR2111e precursor miRNA

Gene family

MIPF0000754; MIR2111

Literature search

2 open access papers mention mtr-MIR2111e
(8 sentences)

Sequence

auauugggauucgauuggaUAAUCUGCAUCCUGAGGUUUAgaacaacagaugcguaauucuaucuaAGCCUUGGGAUGCUGAUUAUCucuuccuuaucaccaaugc
.(((((((((..((..((((((((.(((((((((((((((((.....(((........))).))))))))))))))))).))))))))..))...))).)))))).

Structure

a      -   -uc  uu        U                 acaac   ugc 
 uauugg gau   ga  ggaUAAUC GCAUCCUGAGGUUUAga     aga   g
 |||||| |||   ||  |||||||| |||||||||||||||||     |||    
 guaacc cua   cu  uCUAUUAG CGUAGGGUUCCGAaucu     ucu   u
c      a   uuc  uc        U                 ----a   uaa 

Annotation confidence Not enough data

Genome context

chr7: 16678770-16678875 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from mtr-MIR2111e

Mature mtr-miR2111e-5p

• Accession: MIMAT0013292
• Description: Medicago truncatula mtr-miR2111e-5p mature miRNA
• Sequence: 20 - UAAUCUGCAUCCUGAGGUUUA - 40
• Evidence: experimental ; 454 [1], Illumina [2]

Mature mtr-miR2111e-3p

• Accession: MIMAT0026927
• Description: Medicago truncatula mtr-miR2111e-3p mature miRNA
• Sequence: 67 - AGCCUUGGGAUGCUGAUUAUC - 87
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796


2. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105