Stem-loop sequence mtr-MIR2600a

Accession

MI0011850 (change log)

Previous IDs

mtr-MIR2600

Description

Medicago truncatula miR2600 stem-loop

Gene family

MIPF0001284; MIR2600

Stem-loop

   c      accuuu            a                     c     aaaga 
5'  ggguac      uugggugacauu gccaaucacaaugccacaaug uugug     g
    ||||||      |||||||||||| ||||||||||||||||||||| |||||     a
3'  cuuaug      gacccacuguaa cgguuaguguuacgguguuac aacac     g
   u      ------            c                     a     aaaga 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr7: 6096933-6097045 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011850

Mature sequence mtr-miR2600a

• Accession: MIMAT0013303
• Previous IDs: mtr-miR2600
• Sequence: 21 - acauuagccaaucacaaugcc - 41
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).