miRBase entry: mtr-MIR2601

Stem-loop mtr-MIR2601


Accession
MI0011851
Description
Medicago truncatula mtr-MIR2601 precursor miRNA
Gene family
MIPF0000813; MIR2655


Sequence

auuuugguccuuuaaguauuUAUUUGGUAUCGCUUUGGUCCCuuaacuaaaaaaaagauuguuugaguacuuuaauuuaauuuucguuacauuuuuugguccauuccguuagguuuaauaaaaaauguuaagugugauacacgugucguuuuggcauuggcucuggaaacauuaagggaccaaagugauaccaaauaaauacuuacgggaccaaaag
.((((((((((.((((((((((((((((((((((((((((((((((.............(((((((((....................((((((((((.......((....)).....))))))))))...((((...))))(((((.....)))))..))))...))))))))))))))))))))))))))))))))))))))).)))))))))).

Structure
a          u                                  cuaaaaaaaagau     ---    -----------acuuuaauuuaauuuucguu          guccauu  g 
 uuuugguccu uaaguauuUAUUUGGUAUCGCUUUGGUCCCuuaa             uguuu   gagu                               acauuuuuug       cc u
 |||||||||| ||||||||||||||||||||||||||||||||||             |||||   ||||                               ||||||||||       ||  
 aaaaccaggg auucauaaauaaaccauagugaaaccagggaauu             acaaa   cucg                               uguaaaaaau       gg u
g          c                                  -------------     ggu    guuacgguuuugcugugcacauagugugaau          --aauuu  a 


Annotation confidence Not enough data
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Genome context
chr4: 45064513-45064729 [+]

Database links

Mature mtr-miR2601

Accession MIMAT0013304
Description Medicago truncatula mtr-miR2601 mature miRNA
Sequence 21 - UAUUUGGUAUCGCUUUGGUCCC - 42
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796