Stem-loop sequence mtr-MIR2602a

Accession MI0011852
Description Medicago truncatula miR2602a stem-loop
Gene family MIPF0000820; MIR2585
Stem-loop
a    caca         c                  a   c           c     a      aagaagaggacaaaauau 
 cugc    ucacuaauu gaugacguggcaaucacu cca acaugaaauuc aauuu gcccuu                  u
 ||||    ||||||||| |||||||||||||||||| ||| ||||||||||| ||||| ||||||                  g
 gacg    agugauuaa cuacugcaccguuaguga ggu uguacuuuaag uuaaa ugggga                  a
-    auac         a                  c   a           a     a      cccaaagguuaagaaaga 
Get sequence
Genome context
Coordinates (Mt3.0) Overlapping transcripts
MtChr5: 14075166-14075335 [+]
intergenic
Clustered miRNAs
< 10kb from mtr-MIR2602a
mtr-MIR2602a MtChr5: 14075166-14075335 [+]
mtr-MIR5291b MtChr5: 14077183-14077250 [-]

Mature sequence mtr-miR2602a

Accession MIMAT0013305
Sequence

131 - 

uggcagugauugccacgucau

 - 151

Get sequence
Evidence experimental; 454 [1]

References

1
PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).