Stem-loop sequence mtr-MIR2602b

Accession

MI0011853 (change log)

Description

Medicago truncatula miR2602b stem-loop

Gene family

MIPF0000820; MIR2585

Stem-loop

   a   c  c          c                  a   c                        aagaa   --ga   aua  g 
5'  cug ca gucacuaauu gaugacguggcaaucacu cca acaugaaauuccaauuuugcccuu     gag    caa   uu a
    ||| || |||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||     |||    |||   || a
3'  gac gu cagugauuaa cuacugcaccguuaguga ggu uguacuuuaagguuaaaaugggga     cuc    guu   aa g
   -   c  a          a                  c   a                        -----   aaag   aag  a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr5: 38414668-38414836 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011853

Mature sequence mtr-miR2602b

• Accession: MIMAT0013306
• Sequence: 130 - uggcagugauugccacgucau - 150
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).